STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO69492.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)    
Predicted Functional Partners:
KOO69534.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.904
KOO69425.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.835
KOO69460.1
RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.830
KOO69546.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.792
KOO69078.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.771
KOO67178.1
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.766
KOO67025.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.760
KOO69154.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.682
KOO69838.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.627
KOO69497.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.575
Your Current Organism:
Prevotella rara
NCBI taxonomy Id: 1676614
Other names: DSM 105141, P. rara, Prevotella rara Efimov et al. 2019, Prevotella sp. 109, VKM B-2992, strain 109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.