STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO68253.1Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)    
Predicted Functional Partners:
KOO68251.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.793
KOO68250.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.788
KOO67667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
KOO68252.1
Carbohydrate kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
       0.691
KOO69775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
KOO67595.1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.475
KOO68771.1
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.461
Your Current Organism:
Prevotella rara
NCBI taxonomy Id: 1676614
Other names: DSM 105141, P. rara, Prevotella rara Efimov et al. 2019, Prevotella sp. 109, VKM B-2992, strain 109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.