STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgd_32-(hydroxymethyl)glutarate dehydrogenase. (299 aa)    
Predicted Functional Partners:
ALK89837.1
Hypothetical protein.
 
  
 0.898
mtnB
Methylthioribulose-1-phosphate dehydratase.
 
  
 0.869
hyi
Hydroxypyruvate isomerase; Belongs to the hyi family.
  
 0.829
ALK89839.1
Tripartite tricarboxylate transporter family receptor.
       0.762
fda_2
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
    0.625
fda_1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
    0.539
prmC_2
Release factor glutamine methyltransferase.
       0.500
cprA
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
       0.482
echA8_2
Putative enoyl-CoA hydratase echA8.
 
  
 0.469
kduD
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
       0.445
Your Current Organism:
Limnohabitans sp. 63ED372
NCBI taxonomy Id: 1678128
Other names: L. sp. 63ED37-2, Limnohabitans sp. 63ED37-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.