STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALK91633.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
phnA
Phosphonoacetate hydrolase.
    0.983
ALK91634.1
EamA-like transporter family protein.
       0.835
mlr
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
     0.768
ALK91632.1
Na+/Pi-cotransporter.
 
     0.728
phnW
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
     0.707
safD
Sulfoacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.682
ydfH_2
Putative HTH-type transcriptional regulator YdfH.
       0.617
potH
Putrescine transport system permease protein PotH.
 
     0.605
ALK91628.1
Putative binding protein component of ABC iron transporter precursor.
 
     0.595
zupT
Zinc transporter ZupT.
       0.543
Your Current Organism:
Limnohabitans sp. 103DPR2
NCBI taxonomy Id: 1678129
Other names: L. sp. 103DPR2
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