STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB53541.1Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
KNB49113.1
Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.910
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.860
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.859
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.859
KNB54198.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.810
KNB53540.1
Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.741
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
   
   0.729
KNB50017.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.729
KNB53539.1
Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.724
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.