STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB53668.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
KNB54215.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
KNB54214.1
Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
KNB53670.1
Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.931
KNB53671.1
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.927
KNB53669.1
Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
   
 0.914
KNB53672.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.855
KNB52905.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.772
KNB50856.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
KNB53675.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.698
KNB49673.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.