KNB53776.1 protein (Streptomyces caatingaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KNB53776.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)

Predicted Functional Partners:

KNB51661.1

0.706

KNB50918.1

0.705

KNB49408.1

0.705

KNB49155.1

0.667

KNB51894.1

0.632

KNB49138.1

0.593

KNB51539.1

0.583

KNB50439.1

0.567

KNB53031.1

0.557

KNB50259.1

0.553

Your Current Organism:

Streptomyces caatingaensis

NCBI taxonomy Id: 1678637
Other names: S. caatingaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNB49138.1	KNB49155.1	AC230_27815	AC230_27920	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KNB49138.1	KNB49408.1	AC230_27815	AC230_29605	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
KNB49138.1	KNB50259.1	AC230_27815	AC230_26725	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
KNB49138.1	KNB50439.1	AC230_27815	AC230_22550	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KNB49138.1	KNB50918.1	AC230_27815	AC230_19210	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
KNB49138.1	KNB51539.1	AC230_27815	AC230_14260	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
KNB49138.1	KNB51661.1	AC230_27815	AC230_15075	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
KNB49138.1	KNB51894.1	AC230_27815	AC230_16480	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
KNB49138.1	KNB53031.1	AC230_27815	AC230_10600	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KNB49138.1	KNB53776.1	AC230_27815	AC230_04050	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
KNB49155.1	KNB49138.1	AC230_27920	AC230_27815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KNB49155.1	KNB49408.1	AC230_27920	AC230_29605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KNB49155.1	KNB50259.1	AC230_27920	AC230_26725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
KNB49155.1	KNB50439.1	AC230_27920	AC230_22550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KNB49155.1	KNB51539.1	AC230_27920	AC230_14260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KNB49155.1	KNB51661.1	AC230_27920	AC230_15075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KNB49155.1	KNB51894.1	AC230_27920	AC230_16480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KNB49155.1	KNB53031.1	AC230_27920	AC230_10600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KNB49155.1	KNB53776.1	AC230_27920	AC230_04050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
KNB49408.1	KNB49138.1	AC230_29605	AC230_27815	Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655