STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB53844.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)    
Predicted Functional Partners:
KNB53847.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.860
KNB52562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.821
KNB53034.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.810
KNB52235.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.810
htpX
Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
     
 0.810
htpX-2
Heat shock protein HtpX; Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
     
 0.810
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.794
KNB53843.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.767
KNB52240.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.733
KNB50011.1
Redoxin domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.733
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.