STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB52533.1C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
KNB53153.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.979
KNB54214.1
Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.958
KNB54215.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.958
KNB53670.1
Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.925
KNB52907.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.925
KNB50626.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.925
KNB52532.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.851
KNB49157.1
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.807
KNB52534.1
DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.785
KNB52535.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.753
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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