STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB52760.1F0F1 ATP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
KNB52761.1
Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.966
KNB49069.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
KNB52758.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
KNB52759.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
KNB51902.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
KNB52762.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.739
KNB54367.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
KNB52002.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
KNB51480.1
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
     0.689
KNB53998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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