KNB52799.1 protein (Streptomyces caatingaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KNB52799.1

XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)

Predicted Functional Partners:

KNB53080.1

0.868

KNB52138.1

0.808

KNB51369.1

0.685

katE

0.623

KNB52394.1

0.619

KNB52246.1

0.619

KNB53806.1

0.606

KNB53854.1

0.589

KNB52274.1

0.588

KNB49701.1

0.588

Your Current Organism:

Streptomyces caatingaensis

NCBI taxonomy Id: 1678637
Other names: S. caatingaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNB49701.1	KNB51369.1	AC230_23195	AC230_17520	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
KNB49701.1	KNB52274.1	AC230_23195	AC230_12050	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KNB49701.1	KNB52799.1	AC230_23195	AC230_09150	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
KNB49701.1	KNB53854.1	AC230_23195	AC230_04490	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
KNB51369.1	KNB49701.1	AC230_17520	AC230_23195	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.794
KNB51369.1	KNB52138.1	AC230_17520	AC230_11240	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
KNB51369.1	KNB52246.1	AC230_17520	AC230_11900	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KNB51369.1	KNB52274.1	AC230_17520	AC230_12050	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
KNB51369.1	KNB52394.1	AC230_17520	AC230_11895	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KNB51369.1	KNB52799.1	AC230_17520	AC230_09150	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
KNB51369.1	KNB53080.1	AC230_17520	AC230_09155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KNB51369.1	KNB53854.1	AC230_17520	AC230_04490	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
KNB51369.1	katE	AC230_17520	AC230_05890	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.842
KNB52138.1	KNB51369.1	AC230_11240	AC230_17520	Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
KNB52138.1	KNB52799.1	AC230_11240	AC230_09150	Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
KNB52138.1	KNB53854.1	AC230_11240	AC230_04490	Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
KNB52246.1	KNB51369.1	AC230_11900	AC230_17520	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KNB52246.1	KNB52394.1	AC230_11900	AC230_11895	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KNB52246.1	KNB52799.1	AC230_11900	AC230_09150	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
KNB52246.1	KNB53854.1	AC230_11900	AC230_04490	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619