STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB52483.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)    
Predicted Functional Partners:
KNB52482.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.954
KNB52581.1
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.862
KNB53517.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
KNB53516.1
Type II restriction enzyme, methylase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
KNB53153.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.708
KNB54450.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.704
KNB53515.1
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.694
KNB53511.1
Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.660
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.660
KNB53713.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.648
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.