STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB50572.1iacB; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)    
Predicted Functional Partners:
KNB51369.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
KNB49529.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.861
KNB50573.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.831
KNB51067.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.762
KNB51742.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.749
KNB49042.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.749
KNB53277.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.725
KNB53941.1
PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.604
KNB50790.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.604
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.573
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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