KNB49727.1 protein (Streptomyces caatingaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KNB49727.1

FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)

Predicted Functional Partners:

KNB50293.1

0.806

KNB53598.1

0.777

KNB49726.1

0.746

KNB49730.1

0.728

KNB49729.1

0.679

entE

0.636

KNB50615.1

0.604

KNB50665.1

0.603

KNB49787.1

0.602

KNB52169.1

0.565

Your Current Organism:

Streptomyces caatingaensis

NCBI taxonomy Id: 1678637
Other names: S. caatingaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNB49726.1	KNB49727.1	AC230_23340	AC230_23345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
KNB49726.1	KNB49729.1	AC230_23340	AC230_23360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KNB49726.1	KNB50293.1	AC230_23340	AC230_23350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
KNB49727.1	KNB49726.1	AC230_23345	AC230_23340	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.746
KNB49727.1	KNB49729.1	AC230_23345	AC230_23360	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
KNB49727.1	KNB49730.1	AC230_23345	AC230_23365	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KNB49727.1	KNB49787.1	AC230_23345	AC230_23745	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-dihydroxybenzoate--AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KNB49727.1	KNB50293.1	AC230_23345	AC230_23350	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
KNB49727.1	KNB50615.1	AC230_23345	AC230_22060	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
KNB49727.1	KNB50665.1	AC230_23345	AC230_21655	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-dihydroxybenzoate--AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
KNB49727.1	KNB52169.1	AC230_23345	AC230_11445	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
KNB49727.1	KNB53598.1	AC230_23345	AC230_02850	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
KNB49727.1	entE	AC230_23345	AC230_02845	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Enterobactin synthase subunit E; Bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KNB49729.1	KNB49726.1	AC230_23360	AC230_23340	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
KNB49729.1	KNB49727.1	AC230_23360	AC230_23345	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
KNB49729.1	KNB49730.1	AC230_23360	AC230_23365	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KNB49729.1	KNB50293.1	AC230_23360	AC230_23350	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
KNB49730.1	KNB49727.1	AC230_23365	AC230_23345	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KNB49730.1	KNB49729.1	AC230_23365	AC230_23360	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KNB49730.1	KNB50293.1	AC230_23365	AC230_23350	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757