STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB50223.1SpdA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
KNB50221.1
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.847
KNB49216.1
Plasmid transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
KNB51671.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
KNB49752.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
KNB50191.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
KNB50224.1
Mobile element transfer; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.740
KNB50367.1
Replication initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
KNB51806.1
NYN domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
KNB52614.1
Export associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
KNB49945.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
Your Current Organism:
Streptomyces caatingaensis
NCBI taxonomy Id: 1678637
Other names: S. caatingaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.