STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALE55490.1Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)    
Predicted Functional Partners:
ALE55936.1
Ribonucleotide-diphosphate reductase subunit alpha; Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.916
ALE58866.1
Ribonucleoside-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.859
ALE55491.1
Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.813
ALE55492.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
ALE56676.1
Sugar dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
ALE53545.1
Preprotein translocase subunit SecB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.678
ALE53848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.652
ALE55763.1
Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.556
ALE56869.1
Methionine sulfoxide reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.556
ALE55493.1
RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.528
Your Current Organism:
Burkholderia sp. HB1
NCBI taxonomy Id: 1678678
Other names: B. sp. HB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.