STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0008Conserved hypothetical protein; Identified by similarity to OMNI:SO3280; match to protein family HMM PF04325. (83 aa)    
Predicted Functional Partners:
CPS_0007
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02AT0888.
 
    0.908
ccoQ
Cytochrome c oxidase, cbb3-type, CcoQ subunit; Identified by similarity to GP:21702710; match to protein family HMM PF05545.
   
    0.738
CPS_4350
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
    0.663
CPS_0273
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
    0.661
CPS_2424
Radical SAM domain/B12 binding domain protein; Identified by match to protein family HMM PF02310; match to protein family HMM PF04055.
   
    0.564
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
    0.555
CPS_0029
Outer membrane protein, OmpW family; Identified by match to protein family HMM PF03922.
  
    0.524
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
    0.515
CPS_2796
Identified by match to protein family HMM PF01292.
  
     0.507
hemN
Oxygen-independent coproporphyrinogen III oxidase; Identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.506
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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