STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgSmg protein; Identified by similarity to SP:P30853; match to protein family HMM PF04361; Belongs to the Smg family. (157 aa)    
Predicted Functional Partners:
CPS_0022
Putative DNA processing protein DprA; Identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732.
    
 0.875
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.745
CPS_4555
Putative protease; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO4093; match to protein family HMM TIGR02099.
  
     0.692
CPS_2565
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.681
CPS_0021
LysM domain protein; Identified by similarity to OMNI:SO0033; match to protein family HMM PF01476.
 
     0.665
CPS_0024
Topoisomerase DNA-binding C4 zinc finger domain protein; Identified by similarity to SP:P39814; match to protein family HMM PF01396.
 
   
 0.641
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.641
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.614
CPS_1723
Conserved hypothetical protein; Identified by similarity to OMNI:VC0957.
  
     0.610
CPS_2611
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF2126; match to protein family HMM PF07208; Belongs to the UPF0352 family.
  
     0.601
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.