STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0090Conserved hypothetical protein; Identified by similarity to OMNI:SO3585. (210 aa)    
Predicted Functional Partners:
CPS_0089
Identified by match to protein family HMM PF00903.
  
  
 0.608
CPS_0088
Identified by match to protein family HMM PF00903.
 
     0.539
mer
Methylenetetrahydromethanopterin reductase; Identified by similarity to GP:927438; match to protein family HMM PF00296.
  
 
 0.493
CPS_1278
Putative lipoprotein.
  
     0.459
CPS_0087
Fatty acid cis/trans isomerase; Identified by similarity to GP:5257178; match to protein family HMM PF06934.
 
     0.457
CPS_3358
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.455
CPS_4563
Putative MSHA biogenesis protein MshP; Identified by similarity to OMNI:SO4101.
  
     0.432
CPS_4399
Conserved hypothetical protein; Identified by similarity to OMNI:SO1718.
  
     0.405
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.