STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0114Hypothetical protein; Identified by Glimmer2; putative. (453 aa)    
Predicted Functional Partners:
CPS_0292
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0042.
  
     0.621
CPS_3981
Sensor histidine kinase; Identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.559
CPS_0115
Hypothetical protein; Identified by Glimmer2; putative.
       0.519
CPS_0608
Conserved hypothetical protein; Identified by similarity to OMNI:SO4402.
  
     0.508
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.462
CPS_0598
Putative lipoprotein; Identified by match to protein family HMM PF04141; match to protein family HMM PF07719.
  
     0.434
CPS_4996
Identified by match to protein family HMM PF03372.
  
     0.428
CPS_4997
Identified by match to protein family HMM PF03372.
  
     0.427
CPS_2973
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0582.
  
     0.425
CPS_1413
Conserved hypothetical protein; Identified by similarity to GP:27362574.
  
     0.408
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.