STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0127GGDEF/EAL domain protein; Identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (588 aa)    
Predicted Functional Partners:
CPS_4165
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.895
CPS_4117
Sensor histidine kinase/response regulator; Identified by similarity to SP:P26607; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
  
 0.872
CPS_4787
Sensory box putative digualylate cyclase; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 0.854
CPS_2475
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
  
 0.830
CPS_2304
Putative type IV pilus biogenesis protein pilZ; Identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238.
    
   0.823
CPS_4481
Sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL01SS01420; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00515; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF07719.
 
  
 0.816
CPS_2879
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.815
CPS_2600
EAL domain protein; Identified by match to protein family HMM PF00563.
  
    0.806
CPS_3990
Putative GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.758
CPS_3258
Sensory box/GGDEF/GAF/EAL domain protein; Identified by similarity to OMNI:SO1500; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
0.737
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.