STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0149Leucine-rich repeat protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF00560. (436 aa)    
Predicted Functional Partners:
CPS_0148
Cold-shock DNA-binding domain family protein; Identified by similarity to SP:Q47130; match to protein family HMM PF00313; match to protein family HMM PF06961.
 
     0.680
CPS_0257
Conserved hypothetical protein; Identified by similarity to GP:28808561.
  
     0.551
CPS_0150
Hypothetical protein; Identified by Glimmer2; putative.
       0.539
CPS_3257
Identified by match to protein family HMM PF01360.
  
     0.507
CPS_2552
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF03692.
  
     0.506
CPS_1322
Oxidoreductase, 2OG-Fe(II) oxygenase family.
  
     0.489
CPS_1308
Identified by match to protein family HMM PF03372.
 
     0.480
CPS_1157
Identified by match to protein family HMM PF00293.
  
     0.459
CPS_0285
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.
  
     0.405
CPS_0514
Tryptophan-rich conserved hypothetical protein; Identified by similarity to GP:28809962; match to protein family HMM TIGR02450.
  
     0.402
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.