STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0152Hypothetical protein; Identified by Glimmer2; putative. (606 aa)    
Predicted Functional Partners:
CPS_1799
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.749
CPS_1287
Identified by match to protein family HMM PF00149.
  
     0.658
CPS_4086
Putative granule-associated protein; Identified by match to protein family HMM TIGR01841.
  
     0.580
CPS_4328
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
   
 0.566
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.519
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.474
CPS_0151
Conserved hypothetical protein; Identified by similarity to OMNI:SO3512.
       0.466
CPS_1956
Putative RND efflux system protein; Identified by match to protein family HMM PF01545.
   
    0.444
CPS_4322
Putative zinc transporter ZitB; Identified by similarity to SP:P75757; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
   
    0.444
CPS_0153
Conserved hypothetical protein; Identified by similarity to SP:P32680.
       0.433
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.