STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsECell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (235 aa)    
Predicted Functional Partners:
CPS_0160
Putative cell division permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 0.996
sapD
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.906
CPS_1795
ATP-dependent peptidase, M41 family; Identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724; Belongs to the AAA ATPase family.
 
  
 0.763
CPS_1798
ATP-dependent peptidase, M41 family; Identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724; Belongs to the AAA ATPase family.
 
  
 0.754
CPS_3316
Putative nitrate ABC transporter, periplasmic nitrate-binding protein; Identified by similarity to SP:P38043.
 
      0.630
CPS_4392
Peptidase, M23/37 family; Identified by match to protein family HMM PF01551.
 
   
 0.594
rpoH
RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
  
 0.542
CPS_0158
Hypothetical protein; Identified by Glimmer2; putative.
       0.538
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
   
 0.522
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.511
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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