STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0231Conserved hypothetical protein; Identified by similarity to GP:27358560. (211 aa)    
Predicted Functional Partners:
CPS_0236
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.979
CPS_0230
Cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
 
 0.973
CPS_0232
Conserved hypothetical protein; Identified by similarity to OMNI:SO4611.
 
  
 0.972
ctaG
Cytochrome c oxidase assembly protein; Identified by similarity to SP:P56940; match to protein family HMM PF04442.
 
 
 0.918
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.913
CPS_0233
Cytochrome c oxidase subunit III; Identified by match to protein family HMM PF00510.
 
  
 0.873
CPS_0235
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
 0.821
CPS_0228
SCO1/SenC family protein; Identified by similarity to OMNI:SO4615; match to protein family HMM PF02630.
       0.609
CPS_0744
Conserved hypothetical protein; Identified by similarity to OMNI:SO1371; match to protein family HMM PF06271.
  
     0.586
CPS_3192
Putative membrane protein.
  
     0.543
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.