Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPS_0263Putative iron-regulated membrane protein; Identified by similarity to OMNI:NTL01XA0270; match to protein family HMM PF03929. (543 aa)    
Predicted Functional Partners:
CPS_0264
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC0250.
  
    0.855
CPS_0262
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC3548.
  
    0.838
fhuE
FhuE receptor; Identified by similarity to SP:P16869; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.795
CPS_2817
Putative regulatory protein; Identified by match to protein family HMM PF04773.
 
   
 0.562
CPS_2723
Putative iron-regulated membrane protein; Identified by match to protein family HMM PF03929.
  
     0.550
CPS_1855
Conserved hypothetical protein; Identified by similarity to GP:28808295; match to protein family HMM PF03929.
 
  
 0.545
CPS_3958
Putative regulatory protein; Identified by similarity to SP:P23485; match to protein family HMM PF04773.
 
   
 0.540
CPS_0244
Putative regulatory protein; Identified by similarity to SP:P23485; match to protein family HMM PF04773.
 
  
 0.537
CPS_3425
tonB-dependent siderophore receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.531
CPS_1347
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.521
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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