STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0267Hypothetical protein; Identified by Glimmer2; putative. (409 aa)    
Predicted Functional Partners:
CPS_0266
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.637
CPS_0958
Identified by match to protein family HMM PF00691.
     
 0.560
CPS_4774
Identified by match to protein family HMM PF00691.
     
 0.560
CPS_0578
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
     
 0.550
CPS_0268
Putative Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
       0.522
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.