STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0274Sigma-54 dependent transcriptional regulator/sensory box protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199. (474 aa)    
Predicted Functional Partners:
CPS_1939
Sensory box sensor histidine kinase/response regulator; Identified by similarity to GP:9857983; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR02481.
 
 0.897
CPS_0068
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.896
CPS_4165
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
0.883
CPS_1882
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL03PA01976; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.854
CPS_4516
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:SO0577; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.854
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.854
CPS_2475
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.848
CPS_4117
Sensor histidine kinase/response regulator; Identified by similarity to SP:P26607; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.835
CPS_4481
Sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL01SS01420; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00515; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF07719.
 
 
 0.825
CPS_1620
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 0.817
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.