STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0293Conserved hypothetical protein; Identified by similarity to GP:28806154. (130 aa)    
Predicted Functional Partners:
gspN
General secretion pathway protein N; Identified by match to protein family HMM PF01203.
  
     0.644
CPS_0292
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0042.
 
     0.544
creA
creA protein; Identified by similarity to SP:P08367; match to protein family HMM PF05981.
  
     0.538
CPS_1378
Putative transcriptional activator; Identified by similarity to SP:P40685; match to protein family HMM TIGR02451.
  
     0.537
CPS_2617
Conserved hypothetical protein; Identified by similarity to OMNI:SO4007.
  
     0.513
CPS_0257
Conserved hypothetical protein; Identified by similarity to GP:28808561.
  
     0.488
CPS_2618
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.456
CPS_1651
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.451
CPS_2780
Conserved hypothetical protein; Identified by similarity to OMNI:SO2181.
  
     0.437
CPS_1467
Zinc carboxypeptidase-related protein; Identified by match to protein family HMM PF00246.
  
     0.425
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.