STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0301Conserved hypothetical protein; Identified by similarity to OMNI:VC0163; match to protein family HMM PF04380. (83 aa)    
Predicted Functional Partners:
CPS_0295
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02YP0443; match to protein family HMM PF06843.
  
   
 0.689
CPS_3827
Conserved hypothetical protein; Identified by similarity to GP:28805632; match to protein family HMM PF03658; Belongs to the UPF0125 (RnfH) family.
  
     0.628
imp
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.586
smg
Smg protein; Identified by similarity to SP:P30853; match to protein family HMM PF04361; Belongs to the Smg family.
  
     0.585
rep
ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
       0.564
recO
Recombination protein O; Involved in DNA repair and RecF pathway recombination.
 
     0.563
manB
Phosphomannomutase; Identified by similarity to SP:P26341; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
       0.553
CPS_2000
Conserved hypothetical protein; Identified by similarity to OMNI:VC2235.
  
     0.550
CPS_4555
Putative protease; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO4093; match to protein family HMM TIGR02099.
  
     0.549
ftsB
Septum formation initiator family protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.545
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.