STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0329Conserved hypothetical protein; Identified by similarity to OMNI:SO0321. (199 aa)    
Predicted Functional Partners:
CPS_1666
Identified by match to protein family HMM PF00753.
     0.691
CPS_0333
Conserved hypothetical protein; Identified by similarity to OMNI:CC0476.
  
     0.675
CPS_1977
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.657
CPS_1968
Putative OmpA family protein; Identified by similarity to SP:P17315; similarity to SP:P38370.
  
     0.641
CPS_0936
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.640
CPS_2573
Identified by match to protein family HMM PF01979; match to protein family HMM PF07676.
  
     0.579
CPS_0735
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.523
CPS_3167
Putative peptidase; Identified by match to protein family HMM PF00326.
  
     0.516
blc
Lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
 
      0.511
CPS_1467
Zinc carboxypeptidase-related protein; Identified by match to protein family HMM PF00246.
  
     0.496
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.