STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0404Oxidoreductase, NAD/FAD/2Fe-2S iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. (373 aa)    
Predicted Functional Partners:
CPS_1307
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03036; match to protein family HMM PF01243.
      0.907
CPS_4029
Iron-sulfur cluster-binding protein, Rieske family; Identified by match to protein family HMM PF00355.
  
 0.824
CPS_0838
Aminotransferase, class V; Identified by similarity to SP:P55690; match to protein family HMM PF00266.
  
 0.749
CPS_1201
Ferredoxin, 4Fe-4S; Identified by match to protein family HMM PF00037.
  
 
 0.749
soxA1
Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.691
soxA2
Sarcosine oxidase, alpha subunit; Identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372.
 
 
 0.691
cysJ
Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.
   
 
 0.686
iscU
Iron-sulfur cluster assembly protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.679
nfuA
HesB-like domain/NifU-like domain protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.654
fadH2
2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992.
   
 0.618
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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