STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXslyX protein; Identified by similarity to SP:P30857; match to protein family HMM PF04102; Belongs to the SlyX family. (87 aa)    
Predicted Functional Partners:
CPS_0436
Conserved hypothetical protein; Identified by similarity to GP:2160521; match to protein family HMM PF00400.
 
     0.843
ilvM
Acetolactate synthase II, small subunit; Identified by similarity to SP:P13048.
  
     0.686
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; Identified by similarity to SP:P45523; match to protein family HMM PF00254; match to protein family HMM PF01346.
     
 0.549
priB
Primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.541
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.525
CPS_1469
Putative lipoprotein.
  
     0.515
thiI
Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
     0.503
syd
Putative syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.500
CPS_1704
HIT family protein; Identified by similarity to OMNI:VC2075; match to protein family HMM PF01230.
  
    0.474
CPS_2611
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF2126; match to protein family HMM PF07208; Belongs to the UPF0352 family.
  
   
 0.455
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.