STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0478Conserved hypothetical protein; Identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001. (229 aa)    
Predicted Functional Partners:
CPS_1829
Conserved hypothetical protein; Identified by similarity to OMNI:SO4694; match to protein family HMM TIGR02001.
  
     0.764
CPS_1024
Conserved hypothetical protein; Identified by similarity to OMNI:SO3512.
  
     0.619
CPS_0151
Conserved hypothetical protein; Identified by similarity to OMNI:SO3512.
  
     0.611
ntrB
Nitrogen regulation protein NR(II); Identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.557
CPS_0240
Conserved hypothetical protein.
  
     0.539
CPS_0477
Conserved hypothetical protein; Identified by similarity to OMNI:SO0291.
       0.529
CPS_0476
Conserved hypothetical protein; Identified by similarity to OMNI:PP2374.
       0.475
CPS_3736
Conserved hypothetical protein.
  
     0.461
CPS_1927
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.454
CPS_1021
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
     0.425
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.