STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0509Conserved hypothetical protein; Identified by similarity to OMNI:CC2910. (293 aa)    
Predicted Functional Partners:
CPS_0508
HAD-superfamily hydrolase, subfamily IIB; Identified by match to protein family HMM TIGR01484; match to protein family HMM TIGR01486.
     0.983
CPS_2082
Putative glyoxylate reductase; Identified by similarity to GP:13516509; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.909
CPS_4284
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by similarity to SP:Q59516; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.909
serA
D-3-phosphoglycerate dehydrogenase; Identified by similarity to SP:P43885; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.903
CPS_0521
Conserved hypothetical protein; Identified by similarity to OMNI:CC2910.
  
  
 
0.901
CPS_0387
Identified by similarity to GP:16209569; match to protein family HMM PF00171.
     
  0.900
gpmA
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
  0.900
CPS_4669
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
  0.900
CPS_0507
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01HS00220.
 
     0.834
CPS_0506
Putative sucrose phosphorylase; Identified by similarity to SP:P33910; match to protein family HMM PF00128.
 
    0.642
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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