STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0511Putative membrane protein. (229 aa)    
Predicted Functional Partners:
CPS_2653
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.505
CPS_0535
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
     0.502
CPS_0734
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.500
CPS_2554
Peptidase, M28 family; Identified by similarity to GP:4877698; match to protein family HMM PF01546; match to protein family HMM PF04389.
  
     0.476
CPS_2359
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
     0.462
CPS_2185
Putative lipoprotein; Identified by similarity to OMNI:SO3361; match to protein family HMM PF05960.
  
     0.453
CPS_0735
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.449
CPS_0219
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.448
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.447
CPS_2573
Identified by match to protein family HMM PF01979; match to protein family HMM PF07676.
 
    0.444
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.