STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0579Phosphotyrosine protein phosphatase; Identified by similarity to SP:P75880; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (154 aa)    
Predicted Functional Partners:
CPS_3015
Phosphotyrosine protein phosphatase; Identified by similarity to SP:P53433; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 
0.925
CPS_0580
Tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706.
 
 
 0.909
CPS_0578
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
 
  
 0.904
CPS_0838
Aminotransferase, class V; Identified by similarity to SP:P55690; match to protein family HMM PF00266.
  
 
 0.735
CPS_2913
Identified by similarity to SP:Q9H479; match to protein family HMM PF03881; Belongs to the fructosamine kinase family.
 
     0.475
CPS_0582
Polysaccharide biosynthesis protein; Identified by similarity to SP:P37746; match to protein family HMM PF01943.
     
 0.449
CPS_3442
Putative arsenical-resistance protein; Identified by match to protein family HMM PF01758.
  
  
 0.444
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.