STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0588Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (377 aa)    
Predicted Functional Partners:
CPS_0590
Putative polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GP:1929427; match to protein family HMM PF02397.
  
 0.969
CPS_0589
Sugar epimerase family protein; Identified by similarity to SP:Q56623; match to protein family HMM PF07993.
 
  
 0.856
CPS_0587
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.848
CPS_3644
Identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 0.799
CPS_3248
Putative polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:Q04664; match to protein family HMM PF02397.
  
 0.783
ugd
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:P76373; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721.
  
  
 0.723
CPS_0308
UDP-N-acetylglucosamine 2-epimerase/UDP-N-acetyl-D-mannosamine dehydrogenase; Identified by similarity to SP:P27829; match to protein family HMM PF00984; match to protein family HMM PF02350; match to protein family HMM PF03721; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.690
CPS_0586
Identified by similarity to GP:3413449; match to protein family HMM PF00534.
 
     0.639
CPS_0594
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
 
  
 0.639
CPS_0592
Capsular polysaccharide biosynthesis protein; Identified by similarity to GP:3093975; match to protein family HMM PF01370; match to protein family HMM PF07993.
 
  
 0.627
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.