STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0596Putative lipoprotein; Identified by similarity to OMNI:SO1060. (200 aa)    
Predicted Functional Partners:
CPS_0598
Putative lipoprotein; Identified by match to protein family HMM PF04141; match to protein family HMM PF07719.
 
  
 0.888
CPS_0595
Conserved hypothetical protein; Identified by similarity to OMNI:SO2622.
 
    0.850
CPS_4301
Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
    
 
 0.727
CPS_0597
Putative lipoprotein; Identified by similarity to OMNI:VC1895.
  
  
 0.721
CPS_2704
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
   
 0.497
CPS_4969
Conserved hypothetical protein; Identified by similarity to OMNI:SO2794.
  
     0.470
CPS_0733
Conserved hypothetical protein; Identified by similarity to OMNI:SO0835.
  
     0.449
CPS_1195
Intimin/invasin family protein.
  
     0.445
CPS_0124
Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
 
   0.440
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
   0.407
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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