STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0629GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (626 aa)    
Predicted Functional Partners:
CPS_4928
Sensory box/GGDEF/EAL domain protein; Identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.791
CPS_1940
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 0.788
CPS_4373
GGDEF/EAL domain protein; Identified by similarity to GP:27354141; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.784
CPS_0913
Sensory box sensor/GGDEF/EAL domain protein; Identified by similarity to OMNI:PSPTO4208; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.777
CPS_2662
EAL domain protein; Identified by match to protein family HMM PF00563.
 
    0.731
CPS_2200
GGDEF/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.725
CPS_0394
Response regulator/GGDEF/EAL domain protein; Identified by similarity to OMNI:NTL01BS1343; match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.707
CPS_2600
EAL domain protein; Identified by match to protein family HMM PF00563.
  
    0.690
CPS_4375
GGDEF/EAL domain protein; Identified by similarity to GP:27358554; match to protein family HMM PF00563; match to protein family HMM PF00990.
  
    0.653
CPS_4619
HD domain protein; Identified by match to protein family HMM PF01966.
 
 
 0.575
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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