STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0663Conserved hypothetical protein; Identified by similarity to GP:29608559. (146 aa)    
Predicted Functional Partners:
CPS_0664
MaoC domain protein; Identified by similarity to OMNI:NTL02LI3606; match to protein family HMM PF01575.
     0.986
CPS_0665
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P51831; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.859
CPS_0669
Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.842
CPS_0666
acyl-CoA dehydrogenase; Identified by similarity to SP:P45857; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
 0.696
CPS_0662
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
     0.526
CPS_2441
Catalase; Identified by similarity to SP:O68146; match to protein family HMM PF00199; Belongs to the catalase family.
   
 0.514
CPS_3328
Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.514
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.487
fadJ
Fatty oxidation complex, alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. Belongs to the enoyl-CoA hydratase/isomerase family. In the central section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.487
CPS_2035
Oxidoreductase, FAD-binding/iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00970; match to protein family HMM PF03473; match to protein family HMM PF08030.
  
  
 0.425
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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