STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0668Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (388 aa)    
Predicted Functional Partners:
CPS_2722
Putative alpha-methylacyl-CoA racemase; Identified by similarity to SP:Q9UHK6; match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
  
 
0.903
CPS_0669
Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.778
CPS_0667
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.576
CPS_0666
acyl-CoA dehydrogenase; Identified by similarity to SP:P45857; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  0.545
CPS_0664
MaoC domain protein; Identified by similarity to OMNI:NTL02LI3606; match to protein family HMM PF01575.
 
 
 0.471
CPS_0671
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.
  
 
 0.470
CPS_0665
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P51831; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.416
CPS_0670
Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.
       0.400
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.