CPS_0670 protein (Colwellia psychrerythraea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPS_0670

Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199. (534 aa)

Predicted Functional Partners:

CPS_0671

0.773

CPS_0672

0.586

CPS_0673

0.516

CPS_4230

0.503

CPS_0669

0.429

CPS_0436

0.419

CPS_0765

0.419

CPS_4706

0.419

CPS_0668

0.400

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPS_0436	CPS_0670	Conserved hypothetical protein; Identified by similarity to GP:2160521; match to protein family HMM PF00400.	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	0.419
CPS_0436	CPS_4230	Conserved hypothetical protein; Identified by similarity to GP:2160521; match to protein family HMM PF00400.	Hypothetical protein; Identified by Glimmer2; putative.	0.663
CPS_0668	CPS_0669	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.778
CPS_0668	CPS_0670	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	0.400
CPS_0668	CPS_0671	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.	0.470
CPS_0669	CPS_0668	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.778
CPS_0669	CPS_0670	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	0.429
CPS_0669	CPS_0671	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.	0.608
CPS_0669	CPS_0673	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00378.	0.696
CPS_0670	CPS_0436	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Conserved hypothetical protein; Identified by similarity to GP:2160521; match to protein family HMM PF00400.	0.419
CPS_0670	CPS_0668	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.400
CPS_0670	CPS_0669	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.429
CPS_0670	CPS_0671	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.	0.773
CPS_0670	CPS_0672	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Hypothetical protein; Identified by Glimmer2; putative.	0.586
CPS_0670	CPS_0673	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Identified by match to protein family HMM PF00378.	0.516
CPS_0670	CPS_0765	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Hypothetical protein; Identified by Glimmer2; putative.	0.419
CPS_0670	CPS_4230	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Hypothetical protein; Identified by Glimmer2; putative.	0.503
CPS_0670	CPS_4706	Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.	Putative lipoprotein; Identified by match to protein family HMM PF00400.	0.419
CPS_0671	CPS_0668	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.470
CPS_0671	CPS_0669	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2043.	Thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.608

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About