STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0687Conserved hypothetical protein; Identified by similarity to OMNI:CC1353. (249 aa)    
Predicted Functional Partners:
ubiE
Ubiquinone/menaquinone biosynthesis methlytransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
 
0.900
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase; Identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988.
     
  0.900
CPS_1768
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS02717.
     
  0.900
ubiF
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Identified by similarity to SP:P75728; match to protein family HMM PF01360; match to protein family HMM TIGR01988.
     
  0.900
CPS_4233
Identified by match to protein family HMM PF01040.
     
  0.900
CPS_0554
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSA0344.
  
     0.643
CPS_1585
Identified by match to protein family HMM PF01401.
  
     0.486
CPS_0684
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.471
CPS_0686
GGDEF/HAMP domain protein; Identified by similarity to GP:24251273; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.444
CPS_0685
Conserved hypothetical protein; Identified by similarity to GP:27361783.
       0.431
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.