STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0699Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00635; match to protein family HMM PF03794. (146 aa)    
Predicted Functional Partners:
CPS_0701
Putative membrane protein; Identified by similarity to SP:O67062.
 
     0.949
CPS_0700
Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC0272.
       0.798
CPS_0702
Identified by match to protein family HMM PF01557.
       0.604
nirN
Heme-binding protein NirN; Identified by similarity to OMNI:NTL03PA00510; match to protein family HMM PF00034; match to protein family HMM PF02239.
  
     0.461
CPS_2324
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
     0.438
CPS_0703
Conserved hypothetical protein; Identified by similarity to SP:Q9KUB7.
       0.429
nirS
Nitrite reductase; Identified by similarity to SP:P24040; match to protein family HMM PF00034; match to protein family HMM PF02239.
  
     0.428
norB
Nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
 
     0.421
CPS_0698
Long-chain fatty acid transport protein; Identified by similarity to SP:P10384; match to protein family HMM PF03349.
       0.410
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.