STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0767Auxin efflux carrier family protein; Identified by match to protein family HMM PF03547. (308 aa)    
Predicted Functional Partners:
CPS_1761
Putative glutathione-regulated potassium-efflux system protein KefB; Identified by similarity to SP:P45522; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
     0.646
CPS_0331
NADP-dependent malic enzyme, truncated; Identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949.
  
  
 0.587
CPS_2051
NADP-dependent malic enzyme, truncated; Identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF03949.
  
  
 0.587
sfcA
NAD-dependent malic enzyme; Identified by similarity to SP:P26616; match to protein family HMM PF00390; match to protein family HMM PF03949; Belongs to the malic enzymes family.
  
  
 0.587
CPS_4881
NADP-dependent malic enzyme, truncated; Identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949.
  
  
 0.587
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.464
selU
Conserved hypothetical protein; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
       0.464
CPS_1593
Putative glutathione-regulated potassium-efflux system protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
     0.442
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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