CPS_0774 protein (Colwellia psychrerythraea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPS_0774

Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730. (418 aa)

Predicted Functional Partners:

CPS_0776

0.884

CPS_2120

0.846

CPS_4417

0.845

CPS_3505

0.828

CPS_0775

0.811

CPS_0779

0.805

CPS_0575

0.781

CPS_2122

0.759

CPS_4700

0.756

CPS_2119

0.751

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPS_0575	CPS_0774	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.781
CPS_0575	CPS_0775	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.709
CPS_0575	CPS_0776	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative permease; Identified by match to protein family HMM PF02687.	0.743
CPS_0575	CPS_0779	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Sensor histidine kinase; Identified by similarity to GP:29338160; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.637
CPS_0575	CPS_2119	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.785
CPS_0575	CPS_2122	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Sensor histidine kinase; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.632
CPS_0575	CPS_3505	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.626
CPS_0575	CPS_4700	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.504
CPS_0774	CPS_0575	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.781
CPS_0774	CPS_0775	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.811
CPS_0774	CPS_0776	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Putative permease; Identified by match to protein family HMM PF02687.	0.884
CPS_0774	CPS_0779	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Sensor histidine kinase; Identified by similarity to GP:29338160; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.805
CPS_0774	CPS_2119	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.751
CPS_0774	CPS_2120	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.846
CPS_0774	CPS_2122	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Sensor histidine kinase; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.759
CPS_0774	CPS_3505	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.828
CPS_0774	CPS_4417	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	Putative ABC transporter, permease protein; Identified by similarity to PIR:AG0166; match to protein family HMM PF02687.	0.845
CPS_0774	CPS_4700	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.756
CPS_0775	CPS_0575	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.709
CPS_0775	CPS_0774	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.811

page 1 of 5

Network Stats

number of nodes:

5

number of edges:

9

average node degree:

3.6

avg. local clustering coefficient:

0.9

expected number of edges:

4

PPI enrichment p-value:

0.019

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3975

Phospholipase D-like domain, and Phospholipid metabolism

4 of 5

2.79

4.96

5.97e-08

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

aka00564

Glycerophospholipid metabolism

4 of 16

2.29

4.07

2.85e-07

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005576

Extracellular region

3 of 56

1.62

1.19

0.0090

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0677

Repeat

3 of 15

2.19

2.44

0.00017

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13396

Phospholipase_D-nuclease N-terminal

2 of 2

2.89

1.71

0.0041

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR025202

Phospholipase D-like domain

3 of 3

2.89

3.22

2.73e-05

IPR001736

Phospholipase D/Transphosphatidylase

3 of 3

2.89

3.22

2.73e-05

IPR027379

Cardiolipin synthase N-terminal

2 of 2

2.89

1.76

0.0035

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00155

Phospholipase D. Active site motifs.

3 of 3

2.89

4.04

1.73e-06

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About