STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0786Peptidase, M50 family; Identified by match to protein family HMM PF02163. (344 aa)    
Predicted Functional Partners:
CPS_0719
Putative spore maturation protein A/B; Identified by similarity to SP:P35157; similarity to SP:P35158; match to protein family HMM PF07670.
  
  
 0.652
CPS_0785
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
CPS_0514
Tryptophan-rich conserved hypothetical protein; Identified by similarity to GP:28809962; match to protein family HMM TIGR02450.
  
     0.549
CPS_0758
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.535
CPS_1415
Conserved hypothetical protein; Identified by similarity to OMNI:SO1991.
  
     0.492
CPS_4912
Identified by match to protein family HMM PF00892.
 
     0.443
CPS_0595
Conserved hypothetical protein; Identified by similarity to OMNI:SO2622.
  
     0.426
CPS_2152
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; Identified by match to protein family HMM PF03160.
  
     0.418
CPS_1657
Conserved hypothetical protein; Identified by similarity to OMNI:SO0366.
  
     0.413
CPS_1378
Putative transcriptional activator; Identified by similarity to SP:P40685; match to protein family HMM TIGR02451.
  
     0.406
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.