STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0806Putative membrane protein. (1083 aa)    
Predicted Functional Partners:
CPS_0807
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.948
CPS_1654
Conserved hypothetical protein; Identified by similarity to GP:28806276.
 
     0.699
CPS_0805
Putative glutathione S-transferase; Identified by similarity to SP:Q9VG96; match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
       0.671
CPS_2804
BNR repeat protein.
 
  
 0.528
CPS_3430
BNR repeat protein.
 
  
 0.482
CPS_2805
Conserved hypothetical protein; Identified by similarity to OMNI:SO2596; match to protein family HMM PF07044.
 
  
 0.464
CPS_3433
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03922; match to protein family HMM PF07044.
 
  
 0.459
CPS_0804
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.441
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.