STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0823Transcriptional regulator; Identified by similarity to GB:AAP10345.1; match to protein family HMM PF01638. (114 aa)    
Predicted Functional Partners:
CPS_0824
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
     0.771
CPS_1319
Transcriptional regulator; Identified by match to protein family HMM PF01638.
  
     0.756
CPS_2728
Conserved hypothetical protein; Identified by similarity to GP:29608450.
 
  
 0.563
CPS_4694
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
    0.532
CPS_0822
Hypothetical protein; Identified by Glimmer2; putative.
       0.506
CPS_0821
Conserved hypothetical protein; Identified by similarity to GP:18077135.
       0.460
CPS_2855
Substrate-binding transcriptional regulator, araC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR01563.
  
    0.441
CPS_4693
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.411
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.